PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G314800.1
Common NameB456_007G314800, LOC105761207
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 238aa    MW: 26422 Da    PI: 7.4152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G314800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-1279126454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++  rE+ RRd++N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  Gorai.007G314800.1  79 SKACREKLRRDKLNEKFMELSSILEPE---KPPKTDKAAILVDAVRMVTQL 126
                         5678**********************9...99**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.63975126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.82E-878131No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1279140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-979126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1380151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-981132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1706.0E-5141174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVSPENTNYW SSFDYATLIN DIPAPDGPYS GFSWPTRPIN ASSNVFSVEI DGSFEDSDGL  60
KESGSKKRVR SESCNVSSSK ACREKLRRDK LNEKFMELSS ILEPEKPPKT DKAAILVDAV  120
RMVTQLRGEA QKLKDSISSL HDRIKELKAE KNELRDEKQR LKAEKEKLEQ QLKAMNSQPS  180
FMPPAPAFPA AFATAQGQVP GNKLVPFFGY PGVAMWQFML PASLDTSEDH VLRPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434410.11e-175PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-109ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D2R2S31e-175A0A0D2R2S3_G
STRINGVIT_19s0014g05100.t011e-116(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-86bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]